欧文論文リスト

2022

• Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus.
  Homma M, Takekawa N,Fujiwara K,Hao Y,Onoue Y,Kojima, S.
  Genes Cells (2022) 27:568-578. doi: 10.1111/gtc.12975 PubMed
• Functional analysis of the N-terminal region of Vibrio FlhG, a MinD-type ATPase in flagellar number control.
  Homma M,Mizuno A,Hao Y,Kojima S.
  J. Biochem. (2022) 172:99-107. doi: doi:10.1093/jb/mvac047 PubMed
• The periplasmic domain of the ion-conducting stator of bacterial flagella regulates force generation.
  Homma M and Kojima S.
  Front. Microbiol. (2022) 13:869187. doi: 10.3389/fmicb.2022.869187 (April 27) PubMed
• Mutations in the stator protein PomA affect switching of rotational direction in bacterial flagellar motor
  Terashima H, Hori K, Ihara K, Homma M, Kojima S.
  Sci Rep. 2022 Feb 22;12(1):2979. doi: 10.1038/s41598-022-06947-5.PMID: 35194097 PubMed
• Roles of the second messenger c-di-GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp
  Homma M, Kojima S.
  Genes Cells.2022 Jan 24. doi: 10.1111/gtc.12921. Online ahead of print.PMID: 35073606 Review. PubMed
• Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor
  Nishikino T, Sagara Y, Terashima H, Homma M, Kojima S.
  J Biochem. 2022 Jan 6:mvac001. doi: 10.1093/jb/mvac001. Online ahead of print.PMID: 35015887 PubMed

2021

• ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor
  Takekawa N, Nishikino T, Hori K, Kojima S, Imada K, Homma M.
  Genes Cells. . 2021 Sep 6. doi: 10.1111/gtc.12895. Online ahead of print.PMID: 34487583PubMed
• A slight bending of an α-helix in FliM creates a counterclockwise-locked structure of the flagellar motor in Vibrio
  Takekawa N, Nishikino T, Yamashita T, Hori K, Onoue Y, Ihara K, Kojima S, Homma M, Imada K.
  J Biochem. . 2021 Jun 18:mvab074. doi: 10.1093/jb/mvab074. Online ahead of print.PMID: 34143212PubMed
• Putative Spanner Function of the Vibrio PomB Plug Region in the Stator Rotation Model for Flagellar Motor
  Homma M, Terashima H, Koiwa H, Kojima S.
  J Bacteriol.. 2021 Jul 22;203(16):e0015921. doi: 10.1128/JB.00159-21. Epub 2021 Jul 22.PMID: 34096782PubMed
• Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring.
  Takekawa N, Kawamoto A, Sakuma M, Kato T, Kojima S, Kinoshita M, Minamino T, Namba K, Homma M, Imada K.
  mBio.. 2021 Mar 2;12(2):e03199-20. doi: 10.1128/mBio.03199-20. PMID:33653894PubMed
• Site-directed crosslinking identifies the stator-rotor interaction surfaces in a hybrid bacterial flagellar motor.
  Terashima H, Kojima S, Homma M.
  J Bacteriol. . 2021 Feb 22:JB.00016-21. doi: 10.1128/JB.00016-21. Online ahead of print. PMID:33619152PubMed
• Role of the N- and C-terminal regions of FliF, the MS ring component in Vibrio flagellar basal body.
  Kojima S, Kajino H, Hirano K, Inoue Y, Terashima H, Homma M.
  J Bacteriol. . 2021 Feb 22:JB.00009-21. doi: 10.1128/JB.00009-21. Online ahead of print. PMID:33619151PubMed

2020

• The flagellar motor of Vibrio alginolyticus undergoes major structural remodeling during rotational switching.
  Carroll BL, Nishikino T, Guo W, Zhu S, Kojima S, Homma M, Liu J.
  eLife. . 2020 Sep 7;9:e61446. doi: 10.7554/eLife.61446. PMID: 32893817PubMed
• Structure and Energy-Conversion Mechanism of the Bacterial Na+-Driven Flagellar Motor.
  Takekawa N, Imada K, Homma M.
  Trends Microbiol. . 2020 Sep;28(9):719-731. doi: 10.1016/j.tim.2020.03.010. Epub 2020 Apr 23. PMID: 32781026PubMed
• Assembly mechanism of a supramolecular MS-ring complex to initiate bacterial flagellar biogenesis in Vibrio species.
  Terashima H, Hirano K, Inoue Y, Tokano T, Kawamoto A, Kato T, Yamaguchi E, Namba K, Uchihashi T, Kojima S, Homma M.
  J Bacteriol. . 2020 Jun 1:JB.00236-20. doi: 10.1128/JB.00236-20. Online ahead of print. PMID: 32482724PubMed
• Live-cell fluorescence imaging reveals dynamic production and loss of bacterial flagella.
  Zhuang XY, Guo S, Li Z, Zhao Z, Kojima S, Homma M, Wang P, Lo CJ, Bai F.
  Mol Microbiol. . 2020 Aug;114(2):279-291. doi: 10.1111/mmi.14511. Epub 2020 May 2. PMID: 32244780PubMed
• Regulation of the Single Polar Flagellar Biogenesis.
  Kojima S, Terashima H, Homma M.
  Biomolecules. . 2020 Apr 1;10(4):533. doi: 10.3390/biom10040533. PMID: 32259388PubMed
• Characterization of the MinD/ParA-type ATPase FlhG in Vibrio alginolyticus and implications for function of its monomeric form.
  Kojima S, Imura Y, Hirata H, Homma M.
  Genes Cells. 2020 Feb 3. doi: 10.1111/gtc.12754.PubMed
• Tree of motility - A proposed history of motility systems in the tree of life.
  Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y, Tulum I, Wada H, Wakabayashi KI.
  Genes Cells. 2020 Jan;25(1):6-21. doi: 10.1111/gtc.12737.PubMed
• Characterization of FliL Proteins in Bradyrhizobium diazoefficiens: Lateral FliL Supports Swimming Motility, and Subpolar FliL Modulates the Lateral Flagellar System.
  Mengucci F, Dardis C, Mongiardini EJ, Althabegoiti MJ, Partridge JD, Kojima S, Homma M, Quelas JI, Lodeiro AR.
  J Bacteriol. 2020 Feb 11;202(5). pii: e00708-19. doi: 10.1128/JB.00708-19.PubMed
• Characterization of PomA periplasmic loop and sodium ion entering in stator complex of sodium-driven flagellar motor.
  Nishikino T, Iwatsuki H, Mino T, Kojima S, Homma M.
  J. Biochem. 2020 Apr 1;167(4):389-398. pii: mvz102. doi: 10.1093/jb/mvz102. PubMed
• In situ structure of the Vibrio polar flagellum reveals distinct outer membrane complex and its specific interaction with the stator.
  Zhu S, Nishikino T, Takekawa N, Terashima H, Kojima S, Imada K, Homma M, Liu J
  J Bacteriol. 2020 Jan 29;202(4). pii: e00592-19. doi: 10.1128/JB.00592-19. PubMed

2019

• Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor.
  Onoue Y, Iwaki M, Shinobu A, Nishihara Y, Iwatsuki H, Terashima H, Kitao A, Kandori H, Homma M.
  Sci Rep. 2019 Aug 2;9(1):11216. doi: 10.1038/s41598-019-46038-6. PubMed
• Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR-like fold.
  Sakuma M, Nishikawa S, Inaba S, Nishigaki T, Kojima S, Homma M, Imada K.
  J. Biochem. 2019 Aug 1;166(2):197-204. doi: 10.1093/jb/mvz027. PubMed
• Effect of sodium ions on conformations of the cytoplasmic loop of the PomA stator protein of Vibrio alginolyticus.
  Mino T, Nishikino T, Iwatsuki H, Kojima S, Homma M.
  J. Biochem. 2019 May 30. pii: mvz040. doi: 10.1093/jb/mvz040. PubMed
• Structure of Vibrio FliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function.
  Takekawa N, Isumi M, Terashima H, Zhu S, Nishino Y, Sakuma M, Kojima S, Homma M, Imada K.
  MBio. 2019 Mar 19;10(2). pii: e00292-19. doi: 10.1128/mBio.00292-19.PubMed
• Effect of PlzD, a YcgR homolog of c-di-GMP binding protein, on polar flagellar motility in Vibrio alginolyticus.
  Kojima S, Yoneda T, Morimoto W, Homma M.
  J Biochem. 2019 Feb 18. doi: 10.1093/jb/mvz014.PubMed
　

2018

• Rotational direction of flagellar motor from the conformation of FliG middle domain in marine Vibrio.
  Nishikino T, Hijikata A, Miyanoiri Y, Onoue Y, Kojima S, Shirai T, Homma M.
  Sci Rep. 2018 Dec 12;8(1):17793. doi: 10.1038/s41598-018-35902-6.PubMed
• Biochemical analysis of GTPase FlhF which controls the number and position of flagellar formation in marine Vibrio.
  Kondo S, Imura Y, Mizuno A, Homma M, Kojima S.
  Sci Rep. 2018 Aug 14;8(1):12115. doi: 10.1038/s41598-018-30531-5.PubMed
• The Vibrio H-ring facilitates the outer membrane penetration of polar-sheathed flagellum.
  Zhu S, Nishikino T, Kojima S, Homma M, Liu J.
  J Bacteriol. 2018 Aug 13. pii: JB.00387-18. doi: 10.1128/JB.00387-18. [Epub ahead of print]PubMed
• FliL association with flagellar stator in the sodium-driven Vibrio motor characterized by the fluorescent microscopy.
  Lin TS, Zhu S, Kojima S, Homma M, Lo CJ.
  Sci Rep. 2018 Jul 24;8(1):11172. doi: 10.1038/s41598-018-29447-x. PubMed
• The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
  Kojima S, Takao M, Almira G, Kawahara I, Sakuma M, Homma M, Kojima C, Imada K.
  Structure 2018 Apr 3;26(4):590-598.e5. doi: 10.1016/j.str.2018.02.016. PubMed
• The role of conserved charged residues in the bidirectional rotation of the bacterial flagellar motor.
  Onoue Y, Takekawa N, Nishikino T, Kojima S, Homma M.
  Microbiologyopen 2018 Mar 24:e00587. doi: 10.1002/mbo3.587. PubMed
• Solution structure analysis of the periplasmic region of bacterial flagellar motor stators by small angle X-ray scattering.
  Liew CW, Hynson RM, Ganuelas LA, Shah-Mohammadi N, Duff AP, Kojima S, Homma M, Lee LK.
  Biochem Biophys Res Commun 2018 Jan 8;495(2):1614-1619. doi: 10.1016/j.bbrc.2017.11.194. PubMed

2017

• Analysis of the GTPase motif of FlhF in the control of the number and location of polar flagella in Vibrio alginolyticus.
  Kondo S, Homma M, Kojima S.
  Biophys Physicobiol. 2017 Dec 5;14:173-181. doi: 10.2142/biophysico.14.0_173. PubMed
• Application of Environmental Scanning Electron Microscope-Nanomanipulation System on Spheroplast Yeast Cells Surface Observation.
  Rad MA, Ahmad MR, Nakajima M, Kojima S, Homma M, Fukuda T.
  Scanning 2017 Apr 27;2017:8393578. doi: 10.1155/2017/8393578.PubMed
• Molecular architecture of the sheathed polar flagellum in Vibrio alginolyticus.
  Zhu S, Nishikino T, Hu B, Kojima S, Homma M & Liu J.
  Proc Natl Acad Sci U S A 2017 Sep 25. pii: S201712489. doi: 10.1073/pnas.1712489114PubMed
• Structural and Functional Analysis of the C-Terminal Region of FliG, an Essential Motor Component of Vibrio Na+-Driven Flagella.
  Miyanoiri Y, Hijikata A, Nishino Y, Gohara M, Onoue Y, Kojima S, Kojima C, Shirai T, Kainosho M, Homma M.
  Structure 2017 Sep 6. pii: S0969-2126(17)30263-0. doi: 10.1016/j.str.2017.08.010 PubMed
• Localization and domain characterization of the SflA regulator of flagellar formation in Vibrio alginolyticus.
  Inaba S, Nishigaki T, Takekawa N, Kojima S, Homma M.
  Genes Cells 2017 Jul;22(7):619-627. doi: 10.1111/gtc.12501. Epub 2017 May 22 PubMed
• Structure of the Sodium-Driven Flagellar Motor in Marine Vibrio.
  Onoue Y, Homma M.
  Methods Mol Biol 2017;1593:253-258. doi: 10.1007/978-1-4939-6927-2_20 　 PubMed
• Biochemical characterization of the flagellar stator-associated inner membrane protein FliL from Vibrio alginolyticus
  Kumar A, Isumi M, Sakuma M, Zhu S, Nishino Y, Onoue Y, Kojima S, Miyanoiri Y, Imada K, Homma M
  J. Biochem. 161 (4): 331-337 (2017) doi: 10.1093/jb/mvw076 PubMed
• Mutational analysis and overproduction effects of MotX, an essential component for motor function of Na+-driven polar flagella of Vibrio
  Takekawa N, Kojima S, and Homma M.
  J. Biochem. 161 (2): 159-166 (2017) doi: 10.1093/jb/mvw061 PubMed

2016

• Domain-based biophysical characterization of the structural and thermal stability of FliG, an essential rotor component of the Na+-driven flagellar motor
  Onoue Y, Abe-Yoshizumi R, Gohara M, Nishino Y, Kobayashi K, Asami Y, and Homma M.
  Biophy. Physicobiol. 13: 227-233(2016) doi: 10.2142/biophysico.13.0_227 PubMed
• HubP, a polar landmark protein, regulates flagellar number by assisting in the proper polar localization of FlhG in Vibrio alginolyticus. Takekawa N, Kwon S, Nishioka N, Kojima S, Homma M.
  J Bacteriol. 198(22):3091-3098 (2016) doi: 10.1128/JB.00462-16PubMed
• The tetrameric MotA complex as the core of the flagellar motor stator from hyperthermophilic bacterium.
  Takekawa N, Terahara N, Kato T, Gohara M, Mayanagi K, Hijikata A, Onoue Y, Kojima S, Shirai T, Namba K, Homma M.
  Sci Rep. 6:31526 (2016) doi: 10.1038/srep31526.PubMed
• Serine suppresses the motor function of a periplasmic PomB mutation in the Vibrio flagella stator. Nishikino T, Zhu S, Takekawa N, Kojima S, Onoue Y, Homma M
  Genes Cells. 2016 Mar 23;doi: 10.1111/gtc.12357. PubMed
• FliH and FliI ensure efficient energy coupling of flagellar type III protein export in Salmonella.
  Tohru Minamino, Miki Kinoshita, Yumi Inoue1, Yusuke V. Morimoto, Kunio Ihara, Satomi Koya, Noritaka Hara, Noriko Nishioka, Seiji Kojima, Michio Homma & Keiichi Namba
  Microbiologyopen 2016 Feb 25 doi:10.1002/mbo3.340
　
• Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants. Nishiyama S, Takahashi Y, Yamamoto K, Suzuki D, Itoh Y, Sumita K, Uchida Y, Homma M, Imada K, Kawagishi I.
  Sci Rep. 2016 Feb 16 ;6:20866. doi: 10.1038/srep20866. PubMed

2015

• Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria.
  Ishii E, Chiba S, Hashimoto N, Kojima S, Homma M, Ito K, Akiyama Y, Mori H
  Proc Natl Acad Sci U S A . 112(40):E5513-22(2015 Oct 6) PubMed
• Bacterial sheet-powered rotation of a micro-object.
  Masaru Kojima,Tatsuya Miyamoto, Masahiro Nakajima, Michio Homma,Tatsuo Arai,Toshio Fukuda.
  Sensors and Actuators B: Chemical 2015 July 21 doi:10.1016/j.snb.2015.07.071 pdf
• Sodium-driven energy conversion for flagellar rotation of the earliest divergent hyperthermophilic bacterium..
  Takekawa N, Nishiyama M, Kaneseki T, Kanai T, Atomi H, Kojima S, Homma M
  Sci Rep. 2015 Aug 5;5:12711. doi: 10.1038/srep12711 PubMed
• Effect of FliG three-amino-acids deletion in Vibrio polar-flagellar rotation and formation.
  Onoue Y, Kojima S, Homma M.
  J Biochem. 2015 Jul 3. pii: mvv068. PubMed
• The MinD homolog FlhG regulates the synthesis of the single polar flagellum of Vibrio alginolyticus.
  Ono H, Takashima A, Hirata H, Homma M, Kojima S.
  Mol Microbiol. 2015 Jun 25. doi: 10.1111/mmi.13109. PubMed
• FliL associates with the stator to support torque generation of the sodium-driven polar flagellar motor of Vibrio..
  Zhu S, Kumar A, Kojima S, Homma M.
  Mol Microbiol. 2015 Jun 23. doi: 10.1111/mmi.13103.PubMed
• Functional chimeras of flagellar stator proteins between E. coli MotB and Vibrio PomB at the periplasmic region in Vibrio or E. coli..
  Nishino Y1, Onoue Y, Kojima S, Homma M.
  Microbiologyopen. Volume 4, Issue 2, pages 323−331, April 2015 PubMed
• Interaction of the C-terminal tail of FliF with FliG from the Na⁺-driven flagellar motor of Vibrio alginolyticus.
  Ogawa R, Abe-Yoshizumi R, Kishi T, Homma M and Kojima S.
  J Bacteriol. 1;197(1):63-72(2015)PubMed

2014

• Hypoxia-induced localization of chemotaxis-related signaling proteins in Vibrio cholerae.
  Hiremath G1, Hyakutake A, Yamamoto K, Ebisawa T, Nakamura T, Nishiyama SI, Homma M and Kawagishi I.
  Mol Microbiol. 2015 Mar;95(5):780-90. PubMed
• Conformational change in the periplamic region of the flagellar stator coupled with the assembly around the rotor.
  Zhu S, Takao M, Li N, Sakuma M, Nishino Y, Homma M, Kojima S and Imada K.
  Proc Natl Acad Sci USA. 111(37):13523-8(2014) PubMed
• Hybrid-fuel bacterial flagellar motors in Escherichia coli.
  Sowa Y, Homma M, Ishijima A and Berry RM.
  Proc Natl Acad Sci USA. 111(9):3436-41(2014) PubMed
• Contribution of many charged residues at the stator-rotor interface of the Na⁺-driven flagellar motor to torque generation in Vibrio alginolyticus.
  Takekawa N, Kojima S and Homma M.
  J Bacteriol. 196(7)1377-85(2014) PubMed
• Construction of functional fragments of the cytoplasmic loop with the C-terminal region of PomA, a stator component of the Vibrio Na⁺ driven flagellar motor
  Onoue Y1, Abe-Yoshizumi R, Gohara M, Kobayashi S, Nishioka N, Kojima S and Homma M.
  J Biochem. 155(3)207-16(2014) PubMed
• Biophysical characterization of the C-terminal region of FliG, an essential rotor component of the Na⁺ driven flagellar motor
  Gohara M, Kobayashi S, Abe-Yoshizumi R, Nonoyama N, Kojima S, Asami Y and Homma M.
  J Biochem. , 155(2)83-9(2014) PubMed

2013

• Structure, gene regulation and environmental response of flagella in Vibrio
  Shiwei Zhu, Seiji Kojima and Michio Homma.
  Front. Microbiol. , 4: 410.(2013) PubMed
• Biophysical characterization of the C-terminal region of FliG, an essential rotor component of the Na⁺ driven flagellar motor
  Mizuki Gohara, Shiori Kobayashi, Rei Abe-Yoshizumi, Natsumi Nonoyama, Seiji Kojima, Yasuo Asami and Michio Homma.
  J Biochem. , 155(2)83-9(2014) PubMed
• Fluorescence imaging of GFP-fused periplasmic components of Na⁺-driven flagellar motor using Tat pathway in Vibrio alginolyticus.
  Norihiro Takekawa, Seiji Kojima and Michio Homma.
  J Biochem. , 153(6)547-553(2013) PubMed
• Mutation in the a-subunit of F₁F_O-ATPase causes an increased　motility phenotype through the sodium-driven flagella of Vibrio
  Hiroyuki Terashima, Takashi Terauchi, Kunio Ihara, Noriko Nishioka, Seiji Kojima and Michio Homma.
  J Biochem. , 154(2)177-84(2013) PubMed
• X-ray structure analysis and characterization of AFUEI, an elastase inhibitor from Aspergillus fumigatus.
  Sakuma M, Imada K, Okumura Y, Uchiya KI, Yamashita N, Ogawa K, Hijikata A, Shirai T, Homma M, Nikai T.
  J J Biol Chem. , 288(24)17451-17459(2013).PubMed
• Multiple membrane interactions and versatile vesicle deformations elicited by melittin.
  Takahashi T, Nomura F, Yokoyama Y, Tanaka-Takiguchi Y, Homma M, Takiguchi K.
  J Toxins (Basel). , 17;5(4):637-64(2013) PubMed
• High Hydrostatic Pressure Induces Counterclockwise to Clockwise Reversals of the Escherichia coli Flagellar Motor.
  Nishiyama M, Sowa Y, Kimura Y, Homma M, Ishijima A and Terazima M.
  J Bacteriol. , 195(8):1809-14(2013) PubMed
• Na⁺ conductivity of the Na⁺-driven flagellar motor complex composed of unplugged wild-type or mutant PomB with PomA.
  Takekawa N, Terauchi T, Morimoto YV, Minamino T, Lo CJ, Kojima S and Homma M.
  J Biochem. , 153(5):441-51(2013)PubMed
• Large Spectral Change due to Amide Modes of a β-Sheet upon the Formation of an Early Photointermediate of Middle Rhodopsin.
  Furutani Y, Okitsu T, Reissig L, Mizuno M, Homma M, Wada A, Mizutani Y and Sudo Y.
  J Phys Chem B., 117(13):3449-58(2013)PubMed
• Single cell stiffness measurement at various humidity conditions by nanomanipulation of a nano-needle.
  Shen Y, Nakajima M, Yang Z, Tajima H, Najdovski Z, Homma M and Fukuda T.
  Nanotechnology, 24(14):145703(2013)PubMed
• Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT.
  Terashima H, Li N, Sakuma M, Koike M, Kojima S, Homma M and Imada K.
  Proc Natl Acad Sci USA, 110(15):6133-8(2013) PubMed
• Expression, purification and biochemical characterization of the cytoplasmic loop of PomA, a stator component of the Na⁺ driven flagellar motor
  Rei Abe-Yoshizumi, Shiori Kobayashi, Mizuki Gohara, Kokoro Hayashi, Chojiro Kojima, Seiji Kojima, Yuki Sudo, Yasuo Asami and Michio Homma
  BIOPHYSICS , 9:21-29(2013)
• A Novel dnaJ Family Gene, sflA, Encodes an Inhibitor of Flagellation in Marine Vibrio Species
  Maya Kitaoka, Takehiko Nishigaki, Kunio Ihara, Noriko Nishioka, Seiji Kojima and Michio Homma
  J. Bacteriol. , 195(4):816-822(2013) PubMed

2012

• Photo-induced Regulation of the Chromatic Adaptive Gene Expression by Anabaena Sensory Rhodopsin.
  Hiroki Irieda, Teppei Morita, Kimika Maki, Michio Homma, Hiroji Aiba, Yuki Sudo
  Journal of Biological Chemistry , 287(39):32485-93(2012) PubMed
• An intragenic suppressor against a plug-deleted non-motile mutation in PotB, a chimeric stator protein of sodium-driven flagella
  Shiwei Zhu, Michio Homma, and Seiji Kojima
  J. Bacteriol. , 194(24):6728-6735(2012) PubMed
• Mlp24 (McpX) of Vibrio cholerae implicated in pathogenicity functions as a chemoreceptor for multiple amino acids
  So-ichiro Nishiyama, Daisuke Suzuki, Yasuaki Itoh, Kazuho Suzuki, Hirotaka Tajima, Akihiro Hyakutake, Michio Homma, Susan Butler-Wu, Andrew Camilli and Ikuro Kawagishi
  INFECTION AND IMMUNITY, in press
• Mutagenesis of the residues forming an ion binding pocket of the NtpK subunit of Enterococcus hirae V-ATPase
  Miyuki Kawano-Kawada, Tomoko Iwaki, Toshiaki Hosaka, Takeshi Murata, Ichiro Yamato, Michio Homma, and Yoshimi Kakinuma
  J. Bacteriol., in press
• Absorption Spectra and Photochemical Reactions in a Unique Photoactive Protein, middle Rhodopsin MR.
  Inoue K, Reissig L, Sakai M, Kobayashi S, Homma M, Fujii M, Kandori H & Sudo Y.
  J Phys Chem B., 116(20):5888-99(2012). PubMed
• Nanofork for Single Cells Adhesion Measurement via ESEM-Nanomanipulator System.
  Ahmad MR, Nakajima M, Kojima M, Kojima S, Homma, M &Fukuda T.
  IEEE Trans Nanobioscience., 11(1):70-8(2012 Mar). Epub 2012 Jan 23. PubMed
• Characterization of PomA mutants defective in the functional assembly of the Na+ -driven flagellar motor in Vibrio alginolyticus
  Norihiro Takekawa, Na Li, Seiji Kojima, & Michio Homma
  J. Bacteriol., 194(8):1934-9 (2012). PubMed

2011

• Evaluation of the single yeast cell's adhesion to ITO substrates with various surface energies via ESEM nanorobotic manipulation system.
  Shen Y, Ahmad MR, Nakajima M, Kojima S, Homma M & Fukuda T.
  IEEE Trans Nanobioscience., 10(4):217-24 (2011) PubMed
• Mutations targeting the C-terminal domain of FliG can disrupt motor assembly in the Na⁺-driven flagella of Vibrio alginolyticus.
  Kojima S, Nonoyama N, Takekawa N, Fukuoka H, &Homma M.
  J Mol Biol. , 414:62-74 (2011)
• Ligand specificity determined by differentially arranged common ligand-binding residues in the bacterial amino acid chemoreceptors Tsr and Tar.
  Tajima H, Imada K, Sakuma M, Hattori F, Nara T, Kamo N, Homma M, & Kawagishi I.
  J Biol Chem., 286(49):42200-10(2011) PubMed
• Sodium-driven motor of the polar flagellum in marine bacteria Vibrio.
  Li N, Kojima S, & Homma M.
  Genes Cells., 16(10):985-99(2011). PubMed
• Transformation of ActoHMM Assembly Confined in Cell-Sized Liposome.
  Takiguchi K, Negishi M, Tanaka-Takiguchi Y, Homma M, & Yoshikawa K.
  Langmuir., 27(18):11528-35(2011).PubMed
• Effect of ambient humidity on the strength of the adhesion force of single yeast cell inside environmental-SEM.
  Shen Y, Nakajima M, Ahmad MR, Kojima S, Homma M, & Fukuda T.
  Ultramicroscopy., 111(8):1176-83(2011).PubMed
• Design and characterization of nanoknife with buffering beam for in situ single-cell cutting.
  Shen Y, Nakajima M, Yang Z, Kojima S, Homma M, & Fukuda T.
  Nanotechnology, 22(30):305701 (2011) PubMed
• Structure of the flagellar motor protein complex PomAB: implications for the torque-generating conformation.
  Yonekura K, Maki-Yonekura S, & Homma M.
  J Bacteriol. , 193(15):3863-70(2011). PubMed
• A conserved residue, PomB-F22, in the transmembrane segment of the flagellar stator complex, has a critical role in conducting ions and generating torque.
  Terauchi T, Terashima H, Kojima S, & Homma M.
  Microbiology., 157(Pt 8):2422-32(2011). PubMed
• Significance of the glutamate-139 residue of the V-type Na+-ATPase NtpK subunit in catalytic turnover linked with salt tolerance of Enterococcus hirae.
  TKawano-Kawada M, Takahashi H, Igarashi K, Murata T, Yamato I, Homma M, & Kakinuma Y.
  J Bacteriol., Jul;193(14):3657-61(2011). PubMed
• Characterization of the periplasmic region of PomB, a Na+-driven flagellar stator protein in Vibrio alginolyticus.
  Li N, Kojima S, & Homma M.
  J Bacteriol., Aug;193(15):3773-84(2011). PubMed
• Structural characteristics around the β-ionone ring of the retinal chromophore in salinibacter sensory rhodopsin I
  Irieda H, Reissig L, Kawanabe K, Homma M, Kandori H, & Sudo Y
  Biochemistry, 50(22):4912-22 (2011) PubMed
• Study of the time effect on the strength of cell-cell adhesion force by a novel nano-picker.
  Shen Y, Nakajima M, Kojima S, Homma M,& Fukuda T.
  Biochem Biophys Res Commun. , 409(2):160-5(2011).PubMed
• Spectrally Silent Intermediates during the Photochemical Reactions of Salinibacter Sensory Rhodopsin I.
  Inoue K, Sudo Y, Homma M, & Kandori H.
  J Phys Chem B., 115(15):4500-8 (2011) PubMed
• Direct Observation of the Structural Change of Tyr174 in the Primary Reaction of Sensory Rhodopsin II.
  Mizuno M, Sudo Y, Homma M, & Mizutani Y..
  Biochemistry, 50(15):3170-80 (2011) PubMed
• Spectral tuning in sensory rhodopsin I from Salinibacter ruber.
  Sudo Y, Yuasa Y, Shibata J, Suzuki D, & Homma M.
  J Biol Chem., 286(13):11328-36 (2011) PubMed
• A Microbial Rhodopsin with a Unique Retinal Composition Shows Both Sensory Rhodopsin II and Bacteriorhodopsin-like Properties.
  Sudo Y, Ihara K, Kobayashi S, Suzuki D, Irieda H, Kikukawa T, Kandori H, & Homma M.
  J Biol Chem. 50(15):3170-80 (2011) PubMed
• Conversion of mono-polar to peritrichous flagellation in Vibrio alginolyticus.
  Kojima M, Nishioka N, Kusumoto A, Yagasaki J, Fukuda T, & Homma M.
  Microbiol Immunol 55(2): 76-83. (2011) PubMed
• Zernike Phase Contrast Cryo-electron Tomography of Sodium-driven Flagellar Hook-basal Bodies from Vibrio alginolyticus
  Naoki Hosogi; Hideki Shigematsu; Hiroyuki Terashima; Michio Homma; Kuniaki Nagayama
  Journal of Structural Biology, 173: 67-76 (2011) PubMed

2010

• The flagellar basal-body associated protein, FlgT, essential for a novel ring structure in sodium-driven Vibrio motor
  Terashima, H., Koike, M., Kojima, S. & Homma, M.
  J. Bacteriol., 192(21): 5609-15 (2010) PubMed
• Quantitative Evaluation of Injected Molecules into Phospholipid-coated Micro-droplets for In-situ
  Masahiro Nakajima,Yuta Matsuno,Masaru Kojima,Yohko Tanaka-Takiguchi, Kingo Takiguchi,Kousuke Nogawa,Michio Homma,and Toshio Fukuda
  Journal of Robotics and Mechatronics, 22(5):651-658 (2010)
  
• Nanoindentation methods to measure viscoelastic properties of single cells using sharp, flat, and buckling tips inside ESEM.
  Ahmad MR, Nakajima M, Kojima S, Homma M, Fukuda T.
  IEEE Trans Nanobioscience.9(1):12-23.(2010) PubMed
• Disulphide cross-linking between the stator and the bearing components in the bacterial flagellar motor.
  Hizukuri, Y., Kojima, S.& Homma, M.
  J Biochem. in press (2010) PubMed
• Review: Phototactic and Chemotactic Signal Transduction by Transmembrane Receptors and Transducers in Microorganisms.
  Suzuki, D., Irieda, H., Homma, M., Kawagishi, I. & Sudo, Y.
  Sensors 10(4): 4010-4039. (2010)
• Functional transfer of an essential aspartate for the ion binding site in the stator proteins of the bacterial flagellar motor.
  Terashima, H., Kojima, S. & Homma, M.
  J. Mol. Biol. 397(3): 689-696. (2010) PubMed
• Spectroscopic studies of a sensory rhodopsin I homolog from the archaeon Haloarcula vallismortis.
  Yagasaki, J., Suzuki, D., Ihara, K., Inoue, K., Kikukawa, T., Sakai, M., Fujii, M., Homma, M., Kandori, H. & Sudo, Y.
  Biochemistry, (2009) 48(42): 10136-10145. PubMed
  
• Isolation of basal bodies with C-ring components from the Na⁺-driven flagellar motor of Vibrio alginolyticus.
  Koike, M., Terashima, H., Kojima, S. & Homma, M.
  J. Bacteriol. 192(1): 375-378. (2010) PubMed
• Review: Phototactic and Chemotactic Signal Transduction by Transmembrane Receptors and Transducers in Microorganisms.
  Suzuki, D., Irieda, H., Homma, M., Kawagishi, I. & Sudo, Y.
  Sensors 10(4): 4010-4039. (2010)

2009

• Rotational speed control of Na⁺-driven flagellar motor by dual pipettes.
  Nogawa, K., Kojima, M., Nakajima, M., Kojima, S., Homma, M. & Fukuda, T.
  IEEE Trans Nanobioscience. 8(4):341-348. (2009) PubMed
• Interaction between Na⁺ ion and carboxylates of the PomA-PomB stator unit studied by ATR-FTIR spectroscopy.
  Sudo, Y., Kitade, Y., Furutani, Y., Kojima, M., Kojima, S., Homma, M. & Kandori, H.
  Biochemistry,48(49): 11699-11705. (2009) PubMed
  
• Tributyltin sensitivity of vacuolar-type Na⁺-transporting ATPase from Enterococcus hirae.
  Chardwiriyapreecha, S., Inoue, T., Sugimoto, N., Sekito, T., Yamato, I., Murata, T., Homma, M., & Kakinuma, Y.
  J. Toxicol. Sci. (2009) 34(5): 575-579. PubMed
• Characterization of a signaling complex composed of sensory rhodopsin I and its cognate transducer protein from the eubacterium Salinibacter ruber.
  Sudo, Y., Okada, A., Suzuki, D., Inoue, K., Irieda, H., Sakai, M., Fujii, M., Furutani, Y., Kandori, H., & Homma, M.
  Biochemistry. (2009) 48(42): 10136-10145. PubMed
• Dynamic behavior of giant liposomes at desired osmotic pressures.
  Ohno, M., Hamada, T., Takiguchi, K. & Homma, M.
  Langmuir. (2009) 25(19): 11680-11685. PubMed
• Effects of Chloride Ion Binding on the Photochemical Properties of Salinibacter Sensory Rhodopsin I.
  Suzuki, D., Furutani, Y., Inoue, K., Kikukawa, T., Sakai, M., Fujii, M., Kandori, H., Homma, M. & Sudo, Y.
  J. Mol. Biol. 392(1): 48-62. (2009)
• Mutational analysis of the GTP-binding motif of FlhF which regulates the number and placement of the polar flagellum in Vibrio alginolyticus.
  Kusumoto, A., Nishioka, N., Kojima, S. & Homma, M.
  J. Biochem. 146(5): 643-650. (2009) PubMed
• Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB.
  Kojima, S., Imada, K., Sakuma, M., Sudo, Y., Kojima, C., Minamino, T., Homma, M. & Namba, K.
  Mol. Micro. 73(4): 710-718. (2009)
• Comparative study of the ion flux pathway in stator units of proton- and sodium-driven flagellar motors.
  Sudo, Y., Terashima, H., Abe-Yoshizumi, R., Kojima, S. & Homma, M.
  Biophysics,.5: 45-52. (2009)
• The peptidoglycan-binding (PGB) domain of the Escherichia coli Pal protein can also function as the PGB domain in E. coli flagellar motor protein MotB. J. Biochem.
  Hizukuri, Y., Morton, J.F., Yakushi, T., Kojima, S. & Homma, M.
  146(2):219-229. (2009).
• Sodium-dependent dynamic assembly of membrane complexes in sodium-driven flagellar motors.
  Fukuoka, H., Wada, T., Kojima, S., Ishijima, A. & Homma, M.
  Mol. Microbiol.71(4): 825-835. (2009) pdf

2008

• A photochromic photoreceptor from a eubacterium.
  Suzuki, D., Kitajima-Ihara, T., Furutani, Y., Ihara, K., Kandori, H., Homma, M. & Sudo, Y.
  Commun Integr Biol. 1(2):150-152. (2008) PubMed
• Flagellar motility in bacteria structure and function of flagellar motor.
  Terashima, H., Kojima, S. & Homma, M.
  Int. Rev. Cell. Mol. Biol.270:39-85. Review. (2008) pdf
• Structural Changes of Salinibacter Sensory Rhodopsin I upon Formation of the K and M Photointermediates.
  Suzuki, D., Sudo, Y., Furutani, Y., Takahashi, H., Homma, M. & Kandori, H.
  Biochemistry,47(48): 12750-12759. (2008) pdf
• Cell-free synthesis of the torque-generating membrane proteins, PomA and PomB, of the Na⁺-driven flagellar motor in Vibrio alginolyticus.
  Terashima, H., Abe-Yoshizumi, R., Kojima, S. & Homma, M.
  J. Biochem.144(5):635-642. (2008) pdf
• The Effects of Cell Sizes, Environmental Conditions, and Growth Phases on the Strength of Individual W303 Yeast Cells Inside ESEM. Ahmad, M.R., Nakajima, M., Kojima, S., Homma, M. & Fukuda, T.
  IEEE Transactions on Nanobioscience, 7(3): 185-193. (2008) pdf
• Salinibacter sensory rhodopsin: Sensory rhodopsin I-like protein from a eubacterium.
  Kitajima-Ihara, T., Furutani, Y., Suzuki, D., Ihara, K., Kandori, H., Homma, M. & Sudo, Y.
  J. Biol. Chem.283(35): 23533-23541. (2008) pdf
• Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY.
  Kojima, S., Shinohara, A., Terashima, H., Yakushi, T., Sakuma, M., Homma, M., Namba, K. & Imada, K.
  Proc. Nat.l Acad. Sci. U S A. 105(22): 7696-7701. (2008) pdf
• Steric Constraint in the Primary Photoproduct of Sensory Rhodopsin II Is a Prerequisite for Light-Signal Transfer to HtrII.
  Ito, M., Sudo, Y., Furutani, Y., Okitsu, T., Wada, A., Homma, M., Spudich, J.L. & Kandori, H.
  Biochemistry, 47(23): 6208-6215. (2008) pdf
• Roles of charged residues in the C-terminal region of PomA, a stator component of the Na⁺-driven flagellar motor.
  Obara, M., Yakushi, T., Kojima, S. & Homma, M.
  J. Bacteriol. 190(10): 3565-3571. (2008) pdf
• Collaboration of FlhF and FlhG to regulate polar-flagella number and localization in Vibrio alginolyticus.
  Kusumoto, A., Shinohara, A., Terashima, H., Kojima, S., Yakushi, T. & Homma, M.
  Microbiology,154(5): 1390-1399. (2008) pdf
• Systematic Cys mutagenesis of Flgl, the flagellar P-ring component of Escherichia coli.
  Hizukuri, Y., Kojima, S., Yakushi, T., Kawagishi, I. & Homma, M.
  Microbiology, 154(3): 810-817. (2008) pdf
• Torque-speed relationships of Na⁺-driven chimeric flagellar motors in Escherichia coli.
  Inoue, Y., Lo, C.J., Fukuoka, H., Takahashi, H., Sowa, Y., Pilizota, T., Wadhams, G.H.,
  Homma, M., Berry, R.M. & Ishijima, A.
  J. Mol. Biol.376(5): 1251-1259. (2008) pdf

2007

• Crystallization and preliminary X-ray analysis of MotY, a stator component of the Vibrio alginolyticus polar flagellar motor.
  Shinohara, A., Sakuma, M., Yakushi, T., Kojima, S., Namba, K., Homma, M. & Imada, K.
  Acta. Cryst. 63(2): 89-92. (2007) pdf
• Visualization of functional rotor proteins of the bacterial flagellar motor in the cell membrane.
  Fukuoka, H., Sowa, Y., Kojima, S., Ishijima, A. & Homma, M.
  J. Mol. Biol.367(3): 692-701. (2007) pdf
• The bidirectional polar and unidirectional lateral flagellar motors of Vibrio alginolyticus are controlled by a single CheY species.
  Kojima, M., Kubo, R., Yakushi, T., Homma, M. & Kawagishi, I.
  Mol. Micro. 64(1): 57-67. (2007) pdf

2006

• The Vibrio motor proteins, MotX and MotY, are associated with the basal body of Na⁺-driven flagella and required for stator formation.
  Terashima, H., Fukuoka, H., Yakushi, T., Kojima, S. & Homma, M.
  Mol. Micro.62(4): 1170-1180. (2006) pdf
• Control of chemotactic signal gain via modulation of a pre-formed receptor array.
  Irieda, H., Homma, M., Homma, M. & Kawagishi, I.
  J. Biol. Chem.281(33): 23880-23886. (2006) pdf
• Roles of the intramolecular disulfide bridge in MotX and MotY, the specific proteins for sodium-driven motors in Vibrio spp.
  Yagasaki, J., Okabe, M., Kurebayashi, R., Yakushi, T. & Homma, M.
  J. Bacteriol.188(14): 5308-5314. (2006) pdf
• Role of the intramolecular disulfide bond in FlgI, the flagellar P-ring component of Escherichia coli.
  Hizukuri, Y., Yakushi T., Kawagishi I. & Homma, M.
  J. Bacteriol.188(12): 4190-4197. (2006) pdf
• Helical distribution of the bacterial chemoreceptor via co-localization with the Sec protein translocation machinery.
  Shiomi, D., Yoshimoto, M., Homma, M. & Kawagishi, I.
  Mol. Micro.60(4): 894-906. (2006) pdf
• Electron cryomicroscopic visualization of PomA/B stator units of the sodium-driven flagellar motor in liposomes.
  Yonekura, K., Yakushi, T., Atsumi, T., Maki-Yonekura, S., Homma, M. & Namba, K.
  J. Mol. Biol.357: 73-81. (2006) pdf
• Roles of charged residues of rotor and stator in flagellar rotation: comparative study using H⁺-driven and N⁺-driven motors in Escherichia coli.
  Yakushi, T., Yang, J., Fukuoka, H., Homma, M. & Blair D. F.
  J. Bacteriol.188(4): 1466-1472. (2006) pdf
• Regulation of polar flagellar number by the flhF and flhG genes in Vibrio alginolyticus.
  Kusumoto, A., Kamisaka, K., Yakushi, T., Terashima, H., Shinohara, A. & Homma, M.
  J. Biochem. (Tokyo) 139(1): 113-121. (2006) pdf

2005

• Only one of the five CheY homologs in Vibrio cholerae directly switches flagellar rotation.
  Hyakutake, A., Homma, M., Austin, M. J., Boin, M. A., Hase, C. C. & Kawagishi, I.
  J. Bacteriol.187(24): 8403-8410. (2005) pdf
• Direct observation of steps in rotation of the bacterial flagellar motor.
  Sowa Y., Rowe, A.D., Leake, M.C., Yakushi, T., Homma, M., Ishijima, A. & Berry, R.M.
  Nature, 437(7060): 916-919. (2005) pdf
• Stabilization of polar localization of a chemoreceptor via its covalent modifications and its communication with a different chemoreceptor.
  Shiomi, D., Banno, S., Homma, M. & Kawagishi, I.
  J. Bacteriol.187(22): 7647-7654. (2005) pdf
• Assembly of motor proteins, PomA and PomB, in the Na⁺-driven stator of the flagellar motor.
  Fukuoka, H., Yakushi, T., Kusumoto, A. & Homma, M.
  J. Mol. Biol.351(4): 707-717. (2005) pdf
• Interactions of MotX with MotY and with the PomA/PomB sodium ion channel complex of the Vibrio alginolyticus polar flagellum.
  Okabe, M., Yakushi, T. & Homma, M.
  J. Biol. Chem. 280(27): 25659-25664. (2005) pdf
• Deletion analysis of the carboxyl-terminal region of the PomB component of the Vibrio alginolyticus polar flagellar motor.
  Yakushi, T., Hattori, N. & Homma, M.
  J. Bacteriol.187(2): 778-784. (2005) pdf

2004

• Concerted effects of amino acid substitutions in conserved charged residues and other residues in the cytoplasmic domain of PomA, a stator component of Na⁺-driven flagella.
  Fukuoka, H., Yakushi, T. & Homma, M.
  J. Bacteriol. 186(20): 6749-6758. (2004) pdf
• Interaction of PomB with the third transmembrane segment of PomA in the Na⁺-driven polar flagellum of Vibrio alginolyticus.
  Yakushi, T., Maki, S. & Homma, M.
  J. Bacteriol. 186(16): 5281-5291. (2004) pdf
• Targeting of the chemotaxis methylesterase/deamidase CheB to the polar receptor-kinase cluster in an Escherichia coli cell.
  Banno, S., Shiomi, D., Homma, M. & Kawagishi, I.
  Mol. Microbiol. 53(4): 1051-1063. (2004) pdf
• Attractant binding alters arrangement of chemoreceptor dimers within its cluster at a cell pole.
  Homma, M., Shiomi, D., Homma, M. & Kawagishi, I.
  Proc. Natl. Acad. Sci. USA, 101(10): 3462-3467. (2004) pdf
• Isolation of Vibrio alginolyticus sodium-driven flagellar motor complex composed of PomA and PomB solubilized by sucrose monocaprate.
  Yakushi, T., Kojima, M. & Homma, M.
  Microbiology,150(4): 911-920. (2004) pdf
• Multimeric structure of the PomA/PomB channel complex in the Na⁺-driven flagellar motor of Vibrio alginolyticus.
  Yorimitsu, T., Kojima, M., Yakukshi, T. & Homma, M.
  J. Biochem. 135(1): 43-51. (2004)

2003

• The conserved charged residues of the C-terminal region of FliG, a rotor component of Na⁺-driven flagellar motor.
  Yorimitsu, T., Mimaki, A., Yakushi, T. & Homma, M.
  J. Mol. Biol.334(3): 567-583. (2003) pdf
• Flagellum-independent trail formation of Escherichia coli on semi-solid agar.
  Fukuoka, H., Homma, M. & Ichihara, S.
  Biosci. Biotechnol. Biochem. 67(8): 1802-1805. (2003) pdf
• Torque-speed relationship of the Na⁺-driven flagellar motor of Vibrio alginolyticus.
  Sowa, Y., Hotta, H., Homma, M. & Ishijima, A.
  J. Mol. Biol.327(5): 1043-1051. (2003) pdf
• Ion-coupling determinants of Na⁺-driven and H⁺-driven flagellar motors.
  Asai, Y., Yakushi, T., Kawagishi, I. & Homma, M.
  J. Mol. Biol.327(2): 453-463. (2003) pdf

2002

• Dual recognition of the bacterial chemoreceptor by chemotaxis-specific domains of the CheR methyltransferase.
  Shiomi, D., Zhulin, I. B., Homma, M. & Kawagishi, I.
  J. Biol. Chem. 277(44): 42325-42333. (2002) pdf
• MotX and MotY, specific components of the sodium-driven flagellar motor, colocalize to the outer membrane in Vibrio alginolyticus.
  Okabe, M., Yakushi, T., Kojima, M. & Homma, M.
  Mol. Microbiol. 46(1): 125-134. (2002) pdf
• Intragenic suppressors of a mutation in the aspartate chemoreceptor gene that abolishes binding of the receptor to methyltransferase.
  Shiomi, D., Homma, M. & Kawagishi, I.
  Microbiology, 148: 3265-3275. (2002) pdf
• The systematic substitutions around the conserved charged residues of the cytoplasmic loop of Na⁺-driven flagellar motor component PomA.
  Yorimitsu, T., Sowa, Y., Ishijima, A., Yakushi, T. & Homma, M.
  J. Mol. Biol. 320(2): 403-413. (2002) pdf
• Sensing of cytoplasmic pH by bacterial chemoreceptors involves the linker region that connects the membrane-spanning and the signal-modulating helices.
  Umemura, T., Matsumoto, Y., Ohnishi, K., Homma, M. & Kawagishi, I.
  J. Biol. Chem.277(2): 1593-1598. (2002) pdf

2001

• Cloning and characterization of motX, a Vibrio alginolyticus sodium-driven flagellar motor gene.
  Okabe, M., Yakushi, T., Asai, Y. & Homma, M.
  J. Biochem. 130(6): 879-884. (2001) pdf
• Na⁺-driven flagellar motor of Vibrio.
  Yorimitsu, T. & Homma, M.
  Biochim Biophys Acta. 1505: 82-93. (2001) pdf

2000

• Intermolecular cross-linking between the periplasmic loop3-4 regions of PomA, a component of the Na⁺-driven flagellar motor of Vibrio alginolyticus.
  Yorimitsu, T., Sato, K., Asai, Y. & Homma, M.
  J. Biol. Chem. 275(40): 31387-31391. (2000) pdf
• Coupling ion specificity of chimeras between H⁺- and Na⁺-driven motor proteins, MotB and PomB, in Vibrio polar flagella.
  Asai, Y., Kawagishi, I., Sockett, R. E. & Homma, M.
  EMBO J.19(14): 3639-3648. (2000) pdf
• Multimeric structure of PomA, a component of the Na⁺-driven polar flagellar motor of Vibrio alginolytiucs.
  Sato, K. & Homma, M.
  J. Biol. Chem. 275(26): 20223-20228. (2000) pdf
• A slow-motilty phenotype caused by substitutions at residue Asp31 in the PomA channel component of a sodium-driven flagellar motor.
  Kojima, S., Shoji, T., Asai, Y., Kawagishi, I. & Homma, M.
  J. Bacteriol. 182(11): 3314-3318. (2000) pdf
• The Epstein-Barr virus pol catalytic subunit physically interacts with the BBLF4-BSLF1-BBLF2/3 complex.
  Fujii, K., Yokoyama, N., Kiyono, T., Kuzushima, K., Homma, M., Nishiyama, Y., Fujita, M. & Tsurumi, T.
  J. Virol.74(6): 2550-2557. (2000)
• Mutational analysis of ligand recognition by tcp, the citrate chemoreceptor of Salmonella enterica serovar typhimurium.
  Iwama, T., Nakao, K. I., Nakazato, H., Yamagata, S., Homma, M. & Kawagishi, I.
  J. Bacteriol.182(5): 1437-1441. (2000) pdf
• The aspartate chemoreceptor Tar is effectively methylated by binding to the methyltransferase mainly through hydrophobic interaction.
  Shiomi, D., Okumura, H., Homma, M. & Kawagishi, I.
  Mol. Microbiol.. 36(1): 132-140. (2000)
• Functional reconstitution of the Na⁺-driven polar flagellar motor component of Vibrio alginolyticus.
  Sato, K. & Homma, M.
  J. Biol. Chem.275: 5718-5722. (2000) pdf
• Characterization of a flagellar sheath component , PF60, and its structural gene in marine Vibrio.
  Furuno, M., Sato, K., Kawagishi, I. & Homma, M.
  J. Biochem. (Tokyo). 127: 29-36. (2000)
• Cysteine-scanning mutagenesis of the periplasmic loop regions of PomA, a putative channel component of the sodium-driven flagellar motor in Vibrio alginolyticus.
  Asai, Y., Syoji, T., Kawagishi, I. & Homma, M.
  J. Bacteriol.182(4): 1001-1007. (2000) pdf

1999

• Random mutagenesis of the pomA gene encoding a putative channel component of the Na⁺-driven polar flagellar motor of Vibrio alginolyticus.
  Kojima, S., Kuroda, M., Kawagishi, I. & Homma, M.
  Microbiology,145: 1759-1767. (1999) pdf
• Hybrid Motor with H⁺-and Na⁺-driven components can rotate Vibrio polar flagella by using sodium ions.
  Asai, Y., Kawagishi, I., Sockett, R. E. & Homma, M.
  J. Bacteriol.181(20): 6332-6338. (1999) pdf
• Conversion of a bacterial warm sensor to a cold sensor by methylation of a single residue in the presence of an attractant.
  Nishiyama, S. I., Umemura, T., Nara, T., Homma, M. & Kawagishi, I.
  Mol Microbiol. 32(2): 357-365. (1999)
• Nishiyama, S., Maruyama, I. N., Homma, M. Kawagishi, I. (1999). Inversion of thermosensing property of the bacterial receptor Tar by mutations in the second transmembrane region. J Mol Biol. 286(5), 1275-84. pdf
• Na⁺-driven flagellar motor resistant to phenamil, an amiloride analog, caused by mutations in putative channel components.
  Kojima, S., Asai, Y., Atsumi, T., Kawagishi, I. & Homma, M.
  J. Mol. Biol. 285(4): 1537-1547. (1999) pdf
• Functional interaction between PomA and PomB, the Na⁺-driven flagellar motor components of Vibrio alginolyticus.
  Yorimitsu, T., Sato, K., Asai, Y., Kawagishi, I. & Homma, M.
  J. Bacteriol. 181(16): 5103-5106. (1999) pdf
• The polar flagellar motor of Vibrio cholerae is driven by an Na⁺motive force.
  Kojima, S., Yamamoto, K., Kawagishi, I. & Homma, M.
  J. Bacteriol. 181: 1927-1930. (1999) pdf
• Suppression by the DNA fragment of the motX promoter region on long flagellar mutants of Vibrio alginolitycus.
  Furuno, M., Nishioka, N., Kawagishi, I. & Homma, M.
  Microbiol. Immunol.43(1): 39-43. (1999)

1998

• Flagellin-containing membrane vesicles excreted from Vibrio alginolyticus mutants lacking a polar-flagellar filament.
  Nishioka, N., Furuno, M., Kawagishi, I. & Homma, M.
  J. Biochem. (Tokyo)123: 1169-1173. (1998)
• Chemotactic adaptation is altered by changes in the carboxy-terminal sequence conserved among the major methyl-accepting chemoreceptors.
  Okumura, H., Nishiyama, S., Sasaki, A., Homma, M. & Kawagishi, I.
  J. Bacteriol. 180: 1862-1868. (1998) pdf
• Intersubunit interaction between transmembrane helices of the bacterial aspartate chemoreceptor homodimer.
  Umemura, T., Tatsuno, I., Shibasaki, M., Homma, M. & Kawagishi, I.
  J. Biol. Chem.273: 30110-30115. (1998) pdf

1997

• Putative channel components for the fast-rotating sodium-driven flagellar motor of a marine bacterium.
  Asai, Y., Kojima, S., Kato, H., Nishioka, N., Kawagishi, I. & Homma, M.
  J. Bacteriol.179: 5104-5110. (1997) pdf
• Putative channel components for the fast-rotating sodium-driven flagellar motor of a marine bacterium.
  Asai, Y., Kojima, S., Kato, H., Nishioka, N., Kawagishi, I. & Homma, M.
  J. Bacteriol.179: 5104-5110. (1997)
• Uncoupling of ligand-binding affinity of the bacterial serine chemoreceptor from methylation- and temperature modulated signaling states.
  Iwama, T., Homma, M. & Kawagishi, I.
  J. Biol. Chem.272: 13810-13815. (1997) pdf
• Cloning of a Vibrio alginolyticus rpoN gene that is required for polar flagellar formation.
  Kawagishi, I., Nakada, M., Nishioka, N. & Homma, M.
  J. Bacteriol.179: 6851-6854. (1997) pdf
• Vibrio alginolyticus mutants resistant to phenamil, a specific inhibitor of the sodium-driven flagellar motor.
  Kojima, S., Atsumi, T., Muramoto, K., Kudo, S., Kawagishi, I. & Homma, M.
  J. Mol. Biol. 265: 310-318. (1997) pdf
• Thermosensing properties of mutant aspartate chemoreceptors with methyl-accepting sites replaced singly or multiply by alanine.
  Nishiyama, S., Nara, T., Homma, M., Imae, Y. & Kawagishi, I.
  J. Bacteriol.179: 6573-6580. (1997) pdf

1996

• Effect of viscosity on swimming by the lateral and polar flagella of Vibrio alginolitycus.
  Atsumi, T., Maekawa, Y., Yamada, T., Kawagishi, I., Imae, Y. & Homma, M.
  J. Bacteriol.178: 5024-5026. (1996) pdf
• Chemotactic responses to an attractant and a repellent by the polar and lateral flagellar systems of Vibrio alginolyticus.
  Homma, M., Oota, H., Kojima, S., Kawagishi, I. & Imae, Y.
  Microbiology,142: 2777-2783. (1996)
• Characterization of the flagellar hook length control protein FliK of Salmonella typhimurium and Escherichia coli.
  Kawagishi, I., Homma, M., Williams, A. & Macnab, R. M.
  J. Bacteriol.178: 2954-2959. (1996) pdf
• The sodium-driven polar flagellar motor of marine Vibrio as the mechanosensor that regulates lateral flagellar expression.
  Kawagishi, I., Imagawa, M., Imae, Y., McCarter, L. & Homma, M.
  Mol. Microbiol. 20: 693-699. (1996)
• Rotational fluctuation of sodium-driven flagellar motor of Vibrio alginolyticus induced by binding of inhibitors.
  Muramoto, K., Magariyama, Y., Homma, M., Kawagishi, I., Sugiyama, S., Imae, Y. & Kudo, S.
  J. Mol. Biol.259: 687-695.(1996) pdf
• Modulation of the thermosensing profile of the Escherichia coli aspartate receptor tar by covalent modification of its methyl-accepting sites.
  Nara, T., Kawagishi, I., Nishiyama, S., Homma, M. & Imae, Y.
  J. Biol. Chem. 271: 17932-17936. (1996) pdf
• Cloning and characterization of motY, a gene coding for a component of the sodium-driven flagellar motor in Vibrio alginolyticus.
  Okunishi, I., Kawagishi, I. & Homma, M.
  J. Bacteriol. 178: 2409-2415. (1996) pdf
• Signaling by the Escherichia coli aspartate chemoreceptor Tar with a single cytoplasmic domain per dimer.
  Tatsuno, I., Homma, M., Oosawa, K. & Kawagishi, I.
  Science,274: 423-425. (1996)

1995

• In vivo sulfhydryl modification of the ligand-binding site of Tsr, the Escherichia coli serine chemoreceptor.
  Iwama, T., Kawagishi, I., Gomi, S., Homma, M. & Imae, Y.
  J. Bacteriol. 177: 2218-2221. (1995) pdf
• Isolation of the polar and lateral flagellum-defective mutants in Vibrio alginolyticus and identification of their flagellar driving energy sources.
  Kawagishi, I., Maekawa, Y., Atsumi, T., Homma, M. & Imae, Y.
  J. Bacteriol.177: 5158-5160. (1995) pdf
• High-speed rotation and speed stability of the sodium-driven flagellar motor in Vibrio alginolyticus.
  Muramoto, K., Kawagishi, I., Kudo, S., Magariyama, Y., Imae, Y. & Homma, M.
  J. Mol. Biol. 251: 50-58. (1995)

1994

• Removal of the periplasmic DNase before electroporation enhances efficiency of transformation in a marine bacterium Vibrio alginolyticus.
  Kawagishi, I., Okunishi, I., Homma, M. & Imae, Y.
  Microbiology, 140: 2355-2361. (1994)
• Transmembrane signaling by the chimeric chemosensory receptors of Escherichis coli Tsr and Tar with heterologous membrane-spanning regions.
  Tatsuno, I., Lee, L., Kawagishi, I., Homma, M. & Imae, Y.
  Mol. Microbiol.14: 755-762. (1994)
• Electrophoretic karyotypes of isolates of Candida albicans from hospitalized patients
  Doi M., Mizuguchi I., Homma M., Tanaka K.
  Journal of Medical and Veterinary Mycology, 32(2):133-140. (1994)
• Electrophoretic karyotypes of Candida yeasts recurrently isolated from single patients.
  Doi M., Mizuguchi I., Homma M., Tanaka K.
  Microbiology and Immunology, 38(1):19-23. (1994)
• Strain relatedness of Candida albicans strains isolated from children with leukemia and their bedside parents.
  Doi M., Homma M., Iwaguchi S.-I., Horibe K., Tanaka K.
  Journal of Clinical Microbiology, 32(9):2253-2259. (1994)
• Diversity of tandemly repetitive sequences due to short periodic repetitions in the chromosomes of Candida albicans.
  Chibana H., Iwaguchi S.-I., Homma M., Chindamporn A., Nakagawa Y., Tanaka K.
  Journal of Bacteriology, 176(13):3851-3858.(1994)

1993

• Induction of extracellular proteinase in Candida albicans.
  Homma M., Chibana H., Tanaka K.
  Journal of General Microbiology, 139(6):1187-1193. (1993)
• Ultrastructure of proteinase-secreting cells of Candida albicans studied by alkaline bismuth staining and immunocytochemistry.
  Akashi T., Homma M., Kanbe T., Tanaka K.
  Journal of General Microbiology, 139(9):2185-2195. (1993)

1992

• The molecular genetics of Candida albicans.
  Lott T.J., Magee P.T., Barton R., Chu W., Kwon-Chung K.J., Grindle S., Homma M., Iwaguchi S., Kelly R., Lasker B.A., Marrinan J., Monk B., Kurtz M.B., Perlin D., Scherer S., Schmidt D., Tanaka K.
  Journal of Medical and Veterinary Mycology, 30(1):77-85. (1992)
• Evaluation of a protease activation mutant of Sendai virus as a potent live vaccine.
  Maru M., Haraguchi M., Sato K., Hotta H., Homma M.
  Veterinary Microbiology, 30(1):1-12. (1992)
  
• Immunoblotting analysis of sera from patients with candidal vaginitis and healthy females.
  Ishiguro A., Homma M., Sukai T., Higashide K., Torii S., Tanaka K.
  Journal of Medical and Veterinary Mycology, 30(4):281-292. (1992)
• Estimation of chromosome number and size by pulsed-field gel electrophoresis (PFGE) in medically important Candida species.
  Doi M., Homma M., Chindamporn A., Tanaka K.
  Journal of General Microbiology, 138(10):2243-2251. (1992)
• Isolation and characterization of a repeated sequence (RPS1) of Candida albicans.
  Iwaguchi S.-I., Homma M., Chibana H., Tanaka K.
  Journal of General Microbiology, 138(9):1893-1900. (1992)
• Detection of intracellular forms of secretory aspartic proteinase in Candida albicans.
  Homma M., Kanbe T., Chibana H., Tanaka K.
  Journal of General Microbiology, 138(3):627-633. (1992)
• Identification of Candida albicans antigens reactive with immunoglobulin E antibody of human sera.
  Ishiguro A., Homma M., Torii S., Tanaka K.
  Infection and Immunity, 60(4):1550-1557. (1992)
• Clonal variation of chromosome size derived from the rDNA cluster region in Candida albicans.
  Iwaguchi S.-I., Homma M., Tanaka K.
  Journal of General Microbiology, 138(6):1177-1184. (1992)

1989

• Distinct antitumor mechanisms of recombinant interleukin-2 on recombinant interleukin-2-activated killer-sensitive and -resistant murine tumors.
  Maekawa R., Kitagawa T., Koizumi K., Sato K., Homma M.
  Journal of Biological Response Modifiers, 8(6):676-690. (1989)
• L-, P-, and M-ring proteins of the flagellar basal body of Salmonella typhimurium: Gene sequences and deduced protein sequences.
  Jones C.J., Homma M., Macnab R.M.
  Journal of Bacteriology, 171(7):3890-3900. (1989)
• Flagellar switch of Salmonella typhimurium: Gene sequences and deduced protein sequences Kihara M., Homma M., Kutsukake K., Macnab R.M.
  Journal of Bacteriology, 171(6):3247-3257. (1989)
• Export of an N-terminal fragment of Escherichia coli flagellin by a flagellum-specific pathway.
  Kuwajima G., Kawagishi I., Homma M., Asaka J.-I., Kondo E., Macnab R.M.
  Proceedings of the National Academy of Sciences of the United States of America, 86(13):4953-4957. (1989)

1988

• Identification and characterization of the products of six region III flagellar genes (flaAII.3 through flaQII) of Salmonella typhimurium.
  Homma M., Iino T., Macnab R.M.
  Journal of Bacteriology, 170(5):2221-2228. (1988)

1987

• Identification of the M-ring protein of the flagellar motor of Salmonella typhimurium.
  Homma M., Aizawa S., Dean G.E., Macnab R.M.
  Proceedings of the National Academy of Sciences of the United States of America, 84(21):7483-7487. (1987)
• Formation of Flagella lacking outer rings by flaM, flaU, and flaY mutants of Escherichia coli. Ohnishi K., Homma M., Kutsukake K., Iino T.
  Journal of Bacteriology, 169(4):1485-1488. (1987)
• Identification of proteins of the outer (L and P) rings of the flagellar basal body of Escherichia coli.
  Jones C.J., Homma M., Macnab R.M.
  Journal of Bacteriology, 169(4):1489-1492. (1987)
• Identification of flagellar hook and basal body gene products (FlaFV, FlaFVI, FlaFVII, and FlaFVIII) in Salmonella typhimurium.
  Homma M., Ohnishi K., Iino T., Macnab R.M.
  Journal of Bacteriology, 169(8):3617-3624. (1987)
• Regions of Salmonella typhimurium flagellin essential for its polymerization and excretion.
  Homma M., Fujita H., Yamaguchi S., Iino T.
  Journal of Bacteriology, 169(1):291-296. (1987)
• The flaFIX gene product of Salmonella typhimurium is a flagellar basal body component with a signal peptide for export.
  Homma M., Komeda Y., Iino T., Macnab R.M.
  Journal of Bacteriology, 169(4):1493-1498. (1987)
• Localization and stoichiometry of hook-associated proteins within Salmonella typhimurium flagella.
  Ikeda T., Homma M., Iino T.
  Journal of Bacteriology, 169(3):1168-1173. (1987)

1986

• In vitro reconstitution of flagellar filaments onto hooks of filamentless mutants of Salmonella typhimurium by addition of hook-associated proteins.
  Homma M., Iino T., Kutsukake K., Yamaguchi S.
  Proceedings of the National Academy of Sciences of the United States of America, 83(16):6169-6173. (1986)

1985

• Excretion of unassembled hook-associated proteins by Salmonella typhimurium.
  Homma M., Iino T.
  Journal of Bacteriology, 164(3):1370-1372. (1985)
• Structural genes for flagellar hook-associated proteins in Salmonella typhimurium.
  Homma M., Kutsukake K., Iino T.
  Journal of Bacteriology, 163(2):464-471. (1985)
• Locations of hook-associated proteins in flagellar structures of Salmonella typhimurium.
  Homma M., Iino T.
  Journal of Bacteriology, 162(1):183-189. (1985)

1984

• Hook-associated proteins essential for flagellar filament formation in Salmonella typhimurium.
  Homma M., Kutsukake K., Iino T., Yamaguchi S.
  Journal of Bacteriology, 157(1):100-108. (1984)
• Excretion of unassembled flagellin by Salmonella typhimurium mutants deficient in hook-associated proteins.
  Homma M., Fujita H., Yamaguchi S., Iino T.
  Journal of Bacteriology, 159(3):1056-1059. (1984)

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• 須藤雄気、本間道夫（2012)：「光受容タンパク質による微生物の光センシングの理解とその利用」
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  『生化学』 83巻9号 822-833
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  『蛋白質核酸酵素』 53巻 1737-45
• 曽和義幸,　福岡創,　本間道夫 （2007)：「バクテリア超分子ナノべん毛モーターの回転測定」
  『蛋白質核酸酵素』 52 巻 309-316
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  『生物物理』46巻6号 341-344
• 百武晃宏，川岸郁朗，本間道夫（2004）：ビブリオ菌におけるべん毛および走化性関連遺伝子と病原性.　日本細菌学雑誌　59：403-414.
• 岡部真裕子，薬師寿治，本間道夫 (2002): 細菌べん毛． 日本細菌学雑誌　57: 519-536.
• 本間道夫（2000）：べん毛モーター- 細菌の高速タービン -　「シリーズバイオサイエンスの新世紀　第７巻　生体膜のエネルギー装置」（吉田賢右，茂木立志　編）　共立出版（東京）　pp.181-193.
• 立野一郎，川岸郁朗，本間道夫 (1997): 大腸菌化学感覚レセプターの膜を介した情報伝達機構． 日本細菌学雑誌　52: 567-581.
• 小嶋誠司，川岸郁朗，本間道夫 (1996): バクテリアのNa⁺駆動型モーターとべん毛運動． 化学と生物 34: 730-737.
• 本間道夫，川岸郁朗 (1996): 遺伝子産物の精製． 「新　遺伝子操作の基礎技術」（太田美智男　編） 菜根出版（東京） pp. 286-290.
• 本間道夫、岩口伸一、田中健治. (1993) 酵母カンジダ・アルビカンス染色体多型性とそれに関与する反復配列の解析.　（医学微生物の新しい展開： 加藤　編）.　菜根出版
• 本間道夫　(1990)　Candida albicans の菌体外プロテイナーゼ. 細胞 22: 54-57.
• 本間道夫 (1990)　カンジダ酵母の遺伝学的解析への道：ヒトに寄生するCandida albicans を対象にして. Cell Science 6:70-79.
• 本間道夫 (1987)　細菌べん毛繊維形成とフック付随タンパク質. 細胞 19: 317-322.